More info on my Google Scholar profile
Gardeux, Vincent, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Saner Don, Marilyn J. Halonen, Daniel J. Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier. "A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations" Journal of the American Medical Informatics Association (2017) in press
Li, Qike, A. Grant Schissler, Vincent Gardeux, Ikbel Achour, Colleen Kenost, Joanne Berghout, Haiquan Li, Hao Helen Zhang, and Yves A. Lussier. "N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes." BMC medical genomics (2017) doi: DOI: 10.1186/s12920-017-0263-4 [link] [code]
Li, Qike, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, and Yves A. Lussier. "kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects." Journal of biomedical informatics (2017) doi: 10.1016/j.jbi.2016.12.009 [link][code]
Schissler, A. Grant*, Vincent Gardeux*, Qike Li*, Ikbel Achour, Haiquan Li, Walter W. Piegorsch, and Yves A. Lussier. “Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival.” Bioinformatics (2015), doi:10.1093/bioinformatics/btv253 [link] (* joint first authorship)
Pookhao, Naruekamol, Michael B. Sohn, Qike Li, Isaac Jenkins, Ruofei Du, Hongmei Jiang, and Lingling An. “A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.” Bioinformatics (2015) doi:10.1093/bioinformatics/btu635 [link]
Li, Haiquan, Nima Pouladi, Ikbel Achour, Vincent Gardeux, Jianrong Li, Qike Li, Hao Helen Zhang, Fernando D. Martinez, Joe G N Skip Garcia, Yves A. Lussier . “eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs.” Journal of Biomedical Informatics (2015) doi:10.1016/j.jbi.2015.10.010 [link]
Lussier, Yves a, Haiquan Li, Nima Pouladi, and Qike Li.“Accelerating precision biology and medicine with computational biology and bioinformatics.” Genome Biology (2014) doi:10.1186/s13059-014-0450-y [link]
Sohn, Michael B, Lingling An, Naruekamol Pookhao, and Qike Li. “Accurate genome relative abundance estimation for closely related species in a metagenomic sample.” BMC Bioinformatics (2014) doi:10.1186/1471-2105-15-242 [link].